Supersplat | Tool name | Supersplat |
|---|
| URL | http://supersplat.cgrb.oregonstate.edu/ |
|---|
| Important features | 1. It is a short read mapper which aligns RNA Seq data to the reference genome.
2. It performs gapped alignment to define the locations of potential introns.
3. It can detect potential splice junctions. |
|---|
| Citations | Bryant DW Jr, Shen R, Priest HD, Wong WK, Mockler TC. Supersplat--spliced RNA-seq alignment. Bioinformatics. 2010 Jun 15;26(12):1500-5. Epub 2010 Apr 21. PubMed PMID: 20410051; PubMed Central PMCID: PMC2881391.
|
|---|
| Year of publication | 2010 |
|---|
| Rank by usage frequency | 100 |
|---|
| Comments | URL is not working as on 9th May 2012 |
|---|
| Function | RNA seq alignment |
|---|
| Category | Free, Downloadable |
|---|
| License | |
|---|
| Status | |
|---|
| Input file format | |
|---|
| Output file format | |
|---|
| Operating system | Windows 32/64bit
Linux/Unix 32/64bit
Mac OS X 32/64bit |
|---|
| Operating language | |
|---|
| Platform | Illumina/Solexa |
|---|
| Maintained by | |
|---|
| Downloadable file format | |
|---|
| Submission file format | |
|---|
| |
